Between 300,000 and one million Indonesians were killed in the mass-killings following the arrest of PKI members in Sukarno's cabinet on October 6, 1965. Both the military and auxiliaries from conservative Muslim, Catholic, Hindu and secular nationalist militias conducted the killings.[citation needed] Though most communists were identified by locals, the CIA is known to have supplied the Indonesian military with a list of 10,000 suspected communists. Ironically, a CIA study of the events in Indonesia assessed that "In terms of the numbers killed the anti-PKI massacres in Indonesia rank as one of the worst mass murders of the 20th century..".[25]
Time Magazine presented the following account on December 17, 1965: "Communists, red sympathisers and their families are being massacred by the thousands. Backlands army units are reported to have executed thousands of communists after interrogation in remote jails. Armed with wide-bladed knives called parangs, Moslem bands crept at night into the homes of communists, killing entire families and burying their bodies in shallow graves."
"The murder campaign became so brazen in parts of rural East Java, that Moslem bands placed the heads of victims on poles and paraded them through villages. The killings have been on such a scale that the disposal of the corpses has created a serious sanitation problem in East Java and Northern Sumatra where the humid air bears the reek of decaying flesh. Travellers from those areas tell of small rivers and streams that have been literally clogged with bodies."[26]
Among the worst-affected areas was the island of Bali, where PKI had grown rapidly prior to the crackdown. On November 11 clashes erupt between PKI and PNI, ending in massacres of PKI accused members and sympathizers. Whereas much of the anti-PKI pogroms in the rest of the country were carried out by Islamic political organizations in the name of jihad, the killings in Bali were done in the name of Hinduism. Bali stood out as the only place in the country where local soldiers in some way intervened to lessen the slaughter. In December 1966 the military proclaimed that Aceh had been cleared of communists. Simultaneously, Special Military Courts were set up to try jail PKI members. On March 12, 1967 the party was formally banned by Suharto, and The pro-PKI trade union SOBSI was banned in April.
With the justification of denouncing Chinese communism, Suharto not only closed communist-leaning parties, but also extended his reach toward all Chinese Indonesian parties and all aspects of Chinese Indonesian socio-culture. Suharto effectively stripped Chinese Indonesians of power, banning them from politics and the military. He championed forced assimilation policy against Chinese Indonesians so that they would forget their ties to China. This policy brought forth many anti Chinese legislations. Suharto passed and enacted very discriminatory citizenship laws, such as forcing Chinese Indonesians to re-register themselves as Indonesian citizens by renouncing their alleged Chinese citizenship regardless of the validity of the Indonesian citizenship they may already have. He denounced Chinese culture and banned Chinese characters and literature.
In 1975, after Portugal withdrew from its colony of East Timor and the Fretilin movement momentarily took power, Suharto ordered troops to invade East Timor. Later the puppet government installed by Indonesia requested the area be annexed to the country. A detailed statistical report prepared for the Commission for Reception, Truth and Reconciliation in East Timor estimated a minimum of 102,800 conflict-related deaths in the period 1974-1999, namely, approximately 18,600 killings and 84,200 'excess' deaths from hunger and illness.[28] On July 15, 1976 Suharto's "New Order" declared East Timor the 27th province of Indonesia. Following Suharto's 1998 resignation from the Presidency, East Timor voted for independence in 1999 and was transferred to United Nations administration.